- Scarlet Lupercalia
- Scarlet Lupercalia (creator)
- Scarlet Moon
- Scene
- Sceptile
- Sceptile/Jetgoshi & Dylanius9000's version
- Scharlachrot
- Schnee Manor
- Schwartzenguard
- Scizor
- Scolipede
- Scolipede/Madoldcrow1105's version
- Scorch's Pit
- Scorpion (Mortal Kombat)
- Scorpion (Mortal Kombat)/Binho's version
- Scorpion (Mortal Kombat)/Binho's version/Edits
- Scorpion (Mortal Kombat)/Lord Sinistro's version
- Scorpion (Mortal Kombat)/Mike Obrecht's version
- Scorpion (Mortal Kombat)/OMEGAPSYCHO's version
- Scorpion (Mortal Kombat)/SeanAltly's version
- Scorpion (Mortal Kombat)/SeanAltly's version/Alternative palettes
- Scott Pilgrim VERSUS
- Scout
- Scout/Charlotte the Jigglypuff's version
- Scrap Brain Zone
- Scratch Cat
- Scratch Cat/RyleeJanes165 & LDDGYT672's version
- Scratch Cat/Smashfan41's version
- Scream
- Scream/T.O.P.S' version
- Screamin' Hauler
- Screen Combat
- Screen Filler
- Scruffydragon
- Scumbag's House
- SeanAltly
- Seaside Hill
- Secret Headquarters of DangerMouse
- Secret Laboratory
- Secret Point 48106
- Secretary Method
- Security Room
- Segataya-ku Train Station
- Sekibanki
- Sekibanki/Isu's version
- Senna Kyoudou
- Sentinel
- Sentinel/Xslaught's version
- Sentro
- Sentry
- Sentry/Acey's version
- Sephiroth
- Seravy (creator)
- Seven
- Sewer Surfin'
- Shadow DIO
- Shadow Man
- Shadow Man/Gate & O Ilusionista's version
- Shadow Man/Gate & O Ilusionista's version/Alternative palettes
- Shadow Man/Gate & O Ilusionista's version/Edits
- Shadow Moses Island
- Shadow the Hedgehog
- Shadow the Hedgehog/Dylanius9000's version
- Shadow the Hedgehog/MUGENHunter's second version
- Shadow the Hedgehog/MUGENHunter's second version/Edits
- Shaggy Rogers
- Shaggy Rogers/BeanFan112's version
- Shanghai Doll
- Shanghai Doll/RoySquadRocks' version
- Shannon
- Shao Kahn's Throne Room
- Shaquille O'Neal
- Shaquille O'Neal/The None's version
- Shar-Makai
- Shark Bonus
- Shazam7121
- Shazzo
- She-Hulk
- Sheep
- Sheep/Unknown Creator's version
- Sheer Heart Attack
- Sheer Heart Attack/Torimochi's version
- Sheldon's Apartment
- Sheldon Cooper
- Sheldon Cooper/Zobbes' version
- Shell Shock
- Shermie
- Shield Helicarrier
- Shield Helicarrier Invasion
- Shielding
- Shimakaze
- Shimmering Brony
- ShinSamus
- Shin Kazuma
- Shin Lvl 2 Akuma
- Shin Ryu
- Shin Ryu/Jude The Dude's version
- Shingo Yabuki
- Shingo Yabuki/Vans' version
- Shockwave
- Shore of Misty Lake
- Shotgun06
- Shoto Clone
- Shou Toramaru
- Shovel Knight
- Shovel Knight/RoySquadRocks' version
- Shrek
- Shrek's Swamp
- Shrek/Cool's first version
- Shrek/Cool's second version
- ShugenDo
- Shwa
- Shy Guy
- Sierra 117
- Silent Seabed
- Silver Horns Stage
- Silver the Hedgehog
- Silver the Hedgehog/Gladiacloud's version
- Silver the Hedgehog/Gladiacloud's version/Edits
- Silver the Hedgehog/Latroy6's version
- Simon
- Simon Belmont
- Singapore Hotel
- Sinking base
- Skate or die
- Skeleton with AK-47 on Giant Chicken
- Skeleton with AK-47 on Giant Chicken/RoundOne's version
- SkipperThePenguin100
- Skullomania
- Skullomania/SeanAltly & DivineWolf's version
- Skullomania/SeanAltly & DivineWolf's version/Alternative palettes
- Skunk
- Sky Chase
- Sky Noah
- Sky Sanctuary Zone
- Sky of Atlach
- Slap Happy Rhythm Busters
- Slender Man
- Slightly Pissed Off Ryu
- Slot Machine
- Smackdown
- Small Ville
- Smashville
- Smeagol14
- Smol Nozomi Stage
- Snack Vendor
- Snack Vendor/XRedDragonClawsX's version
- Snoopy
- Snoopy/Zobbes' version
- Snorlax
- Snorlax/Ðshiznetz's version
- Snowball
- Snowball/Michael Funiore's version
- Snowy Country
- Socket
- Socket/Sonic-Crash's version
- Socks the Cat
- Socks the Cat/ChillyWilly Sonic Kirby Bubsy's second version
- Socks the Cat/ChillyWilly Sonic Kirby Bubsy's third version
- Sodom's Stage (SFA)
- Soinclenkirbyfan8
- Solar Flare
- Solar Flare/U-Fan05's version
- Solarflared
- Soldier
- Soldier/Charlotte the Jigglypuff's version
- Soldier/Charlotte the Jigglypuff's version/Edits
- Solid Snake
- Solid Snake/SeanAltly's version
- Solosis
- Somebody407
- Sonic.exe
- Sonic Crackers
- Sonic Fighting Remix: Unlimited Match
- Sonic Speed Fighters 2
- Sonic the Fighters 2
- Sonic the Hedgehog
- Sonic the Hedgehog/Claymizer's first version
- Sonic the Hedgehog/Claymizer's second version
- Sonic the Hedgehog/Claymizer's second version/Alternative palettes
- Sonic the Hedgehog/MattTheBiscuit's version
- Sonic the Hedgehog/MattTheBiscuit's version/Edits
- Sonic the Hedgehog/Midnight Spirit & Trial Force's version
- Sonic the Hedgehog/SeanAltly's version
- Sonic the Hedgehog/SeanAltly's version/Alternative palettes
- Sonic the Hedgehog/Shazzo's first version
- Sonic the Hedgehog/Shazzo's first version/Edits
- Sonic the Hedgehog/Shazzo's second version
- Sonic the Hedgehog/Shazzo's third version
- Sonic the Hedgehog (2006)
- Sonic the Hedgehog (2006)/Superteletubbies64's version
- Sonic the Hedgehog (2006)/Superteletubbies64's version/Edits
- Sonic the Hedgehog (series)
- Sonicadam2
- Soniclenkirbyfan8
- Souken
- Soul Ninja MK2
- Soundwave
- SpaceMouse
- SpaceMouse (creator)
- SpaceRainbow
- Space Invader
- Space Invader/Ironcommando's version
- Space Pirate Mother Ship
- Sparkster
- Sparkster/SpaceMouse's version
- Sparta Madness
- Spear Pillar
- Spec Ops
- Special Stage
- Speedy9199
- Speedy Gonzales
- Speedy Gonzales/Sonicadam2's version
- Spelunker
- Spelunker/Nijikaku Team's version
- Spelunker/SUGIO's version
- Spider-Hulk
- Spider-Hulk/Adrian's version
- Spider-Man
- Spider-Man/Brergrsart's version
- Spider-Man/Erradicator's version
- Splash Hill Zone
- Split Mushroom Stage
- SpongeBob SquarePants
- SpongeBob SquarePants/AngryNoahs' first version
- SpongeBob SquarePants/Doug1105's version
- SpongeBob SquarePants/Doug1105's version/Edits
- SpongeBob SquarePants/FelixMario2011's first version
- SpongeBob SquarePants/FelixMario2011's second version
- SpongeBob SquarePants/Ivan Luiz's version
- SpongeBob SquarePants/MyYouTube Rocks' second version
- SpongeBob SquarePants/Rapthemonkey9's version
- SpongeBob SquarePants/UchihaCody's version
- SpongeBob SquarePants (series)
- Spooky Scary Skeletons
- Spring Yard Zone
- Springfield Butte
- Springfield Elementary School
- Springfield Hospital
- Springfield Town Square
- SpriteClub
- Sprite Club Stadium
- Sprite edit
- Spriteswap
- Squid Girl
- SquidlyPoli1
- Squidward Tentacles
- Squidward Tentacles/Unknown version
- Squidward Tentacles/Warioman's version
- Stage Builder
- Stage Select
- Stan Marsh
- Stan Marsh/Evilasio Da Paz Jr.'s second version
- Stand (JJBA)
- Star City Bridge
- Star Light Zone
- Star Wars
- Stardust Speedway
- Starfy
- Starfy/bakisimu's version
- Station Square
- Steel Warriors
- Steve (Minecraft)
- Steve (Minecraft)/Ivan Luiz's version
- Steve (Minecraft)/Knowe386's version
- Steve (Minecraft)/TheNoahGuy1's version
- Steve (Minecraft)/satanchu's version
- Stewie Griffin
- Stewie Griffin/Lows 9.0's version
- Stewie Griffin/Shazzo's version
- Stewie Griffin/The Doctor's version
- Stick Hero
- Stickguy
- Stickguy/Backburner26's version
- StickyKeys
- Still The Best 1973
- Stimpy
- Stimpy/Madoldcrow1105's version
- Street Fighter
- Streets of NYC
- Strength Training
- Strickland Propane
- Strong Bad
- Strong Bad/Weegeeisgoingtokillm's version
- Strong Badia
- Stun
- Stunfisk
- Suave Dude
- Suave Dude/Masukenpu-kun's version
- Sub-Zero
- Sub-Zero/Binho's version
- Sub-Zero/OMEGAPSYCHO's version
- Subcon
- Sue Sakamoto
- Sue Sakamoto/The None's version
- Sugar Rush Speedway
- Sugarcube Corner
- Suika Ibuki
- Suika Ibuki/Aotsuki's version
- Suika Ibuki/RicePigeon's version
- Suika Ibuki/RicePigeon's version/Alternative palettes
- Suika Ibuki/RoySquadRocks' version
- Suika Ibuki/RoySquadRocks' version/Alternative palettes
- Sukapon
- Sukapon/MASA's version
- Sukapon/Matsuri Atono's version
- Sukapon/Yamabe Yui's version
- Sumin
- Sumireko Usami
- Sumireko Usami/RicePigeon's version
- Sumireko Usami/RicePigeon's version/Alternative palettes
- Sunflower
- Sunflower/johnthebeast12's version
- Sunky
- Sunky/Pizzasause's first version
- Sunset Shimmer
- Sunset Shimmer/Shimmering Brony's version
- Sunset Shimmer/The MegaBrony's version
- Sunset Shimmer/ToonAlexSora007's version
- Sunset Shimmer/ToonAlexSora007's version/Alternative palettes
- Super House of Dead Ninjas Boss Rush
- Super Jump
- Super Mario All-Stars: SMB2 World 2
- Super Mario Bros. (bonus game)
- Super Marvel vs. Capcom: Eternity of Heroes
- Super Saiyan Goku
- Super Saiyan Goku/AxKing's version
- Super Saiyan Goku/CHOUJIN's version
- Super Saiyan Goku/The Necromancer's version
- Super Smash Bros.
- Super Smash Bros. Brawl - Sunset
- Super Smash Bros. Brawl Fighter Select Screen
- Super Smash Bros. Fighter Select Screen
- Super Smash Bros. Melee Fighter Select Screen
- Super Smash Bros. Showdown
- Superteletubbies64
- Sutton Lumber Mill
- Suwako Moriya
- Suwako Moriya/RicePigeon's version
- Suzaku Castle
- Sven Hoek
- Sven Hoek/Alerkina4's version
- Sweet Apple Acres
- Sweet Mystery Galaxy
- Sweet Tooth
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